Volume 8; Issue 1 Suppleme

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BMC Bioinformatics
Volume 8; Issue 1 Suppleme

BMC Bioinformatics

Volume 8; Issue 1 Suppleme

1

Bioinformatics in Italy: BITS2006, the third annual meeting of the Italian Society of Bioinformatics

Rita Casadio, Manuela Helmer-Citterich, Graziano Pesole

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 172 KB

english, 2007

2

Significance analysis of microarray transcript levels in time series experiments

Barbara Di Camillo, Gianna Toffolo, Sreekumaran K Nair, Laura J Greenlund, Claudio Cobelli

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 638 KB

english, 2007

3

ProCMD: a database and 3D web resource for protein C mutants

Pasqualina D'Ursi, Francesca Marino, Andrea Caprera, Luciano Milanesi, Elena M Faioni, Ermanna Rovida

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 873 KB

english, 2007

4

On the origin and evolution of biosynthetic pathways: integrating microarray data with structure and organization of the Common Pathway genes

Marco Fondi, Matteo Brilli, Renato Fani

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 412 KB

english, 2007

5

ESTuber db: an online database forTuber borchiiEST sequences

Barbara Lazzari, Andrea Caprera, Cristian Cosentino, Alessandra Stella, Luciano Milanesi, Angelo Viotti

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 606 KB

english, 2007

6

Statistical analysis of genomic protein family and domain controlled annotations for functional investigation of classified gene lists

Marco Masseroli, Elisa Bellistri, Andrea Franceschini, Francesco Pinciroli

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 1.08 MB

english, 2007

7

Environment specific substitution tables for thermophilic proteins

K Mizuguchi, M Sele, MV Cubellis

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 293 KB

english, 2007

8

Correlation analysis reveals the emergence of coherence in the gene expression dynamics following system perturbation

Nicola Neretti, Daniel Remondini, Marc Tatar, John M Sedivy, Michela Pierini, Dawn Mazzatti, Jonathan Powell, Claudio Franceschi, Gastrone C Castellani

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 928 KB

english, 2007

9

Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data

Davide Rambaldi, Barbara Felice, Viviane Praz, Philip Bucher, Davide Cittaro, Alessandro Guffanti

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 435 KB

english, 2007

10

SYMBIOmatics: Synergies in Medical Informatics and Bioinformatics – exploring current scientific literature for emerging topics

Dietrich Rebholz-Schuhman, Graham Cameron, Dominic Clark, Erik van Mulligen, Jean-Louis Coatrieux, Eva Del Hoyo Barbolla, Fernando Martin-Sanchez, Luciano Milanesi, Ivan Porro, Francesco Beltrame, Ioa

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 248 KB

english, 2007

11

Biowep: a workflow enactment portal for bioinformatics applications

Paolo Romano, Ezio Bartocci, Guglielmo Bertolini, Flavio De Paoli, Domenico Marra, Giancarlo Mauri, Emanuela Merelli, Luciano Milanesi

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 2.46 MB

english, 2007

12

BioWMS: a web-based Workflow Management System for bioinformatics

Ezio Bartocci, Flavio Corradini, Emanuela Merelli, Lorenzo Scortichini

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 441 KB

english, 2007

13

p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combiningin silicoprediction and microarray data

Elisabetta Sbisà, Domenico Catalano, Giorgio Grillo, Flavio Licciulli, Antonio Turi, Sabino Liuni, Graziano Pesole, Anna De Grassi, Mariano Francesco Caratozzolo, Anna Maria D'Erchia, Beatriz Navarro,

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 802 KB

english, 2007

14

The Genopolis Microarray Database

Andrea Splendiani, Marco Brandizi, Gael Even, Ottavio Beretta, Norman Pavelka, Mattia Pelizzola, Manuel Mayhaus, Maria Foti, Giancarlo Mauri, Paola Ricciardi-Castagnoli

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 1.02 MB

english, 2007

15

Data handling strategies for high throughput pyrosequencers

Gabriele A Trombetti, Raoul JP Bonnal, Ermanno Rizzi, Gianluca De Bellis, Luciano Milanesi

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 615 KB

english, 2007

16

A global gene evolution analysis onVibrionaceaefamily using phylogenetic profile

Nicola Vitulo, Alessandro Vezzi, Chiara Romualdi, Stefano Campanaro, Giorgio Valle

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 3.79 MB

english, 2007

17

Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites

Gabriele Ausiello, Daniele Peluso, Allegra Via, Manuela Helmer-Citterich

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 2.40 MB

english, 2007

18

A computational approach for detecting peptidases and their specific inhibitors at the genome level

Lisa Bartoli, Remo Calabrese, Piero Fariselli, Damiano G Mita, Rita Casadio

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 345 KB

english, 2007

19

ProtNet: a tool for stochastic simulations of protein interaction networks dynamics

Massimo Bernaschi, Filippo Castiglione, Alessandra Ferranti, Caius Gavrila, Michele Tinti, Gianni Cesareni

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 1.46 MB

english, 2007

20

Cross platform microarray analysis for robust identification of differentially expressed genes

Roberta Bosotti, Giuseppe Locatelli, Sandra Healy, Emanuela Scacheri, Luca Sartori, Ciro Mercurio, Raffaele Calogero, Antonella Isacchi

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 1.18 MB

english, 2007

21

The MEPS server for identifying protein conformational epitopes

Tiziana Castrignanò, Paolo D'Onorio De Meo, Danilo Carrabino, Massimilano Orsini, Matteo Floris, Anna Tramontano

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 449 KB

english, 2007

22

A Grid-based solution for management and analysis of microarrays in distributed experiments

Ivan Porro, Livia Torterolo, Luca Corradi, Marco Fato, Adam Papadimitropoulos, Silvia Scaglione, Andrea Schenone, Federica Viti

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 449 KB

english, 2007

23

The BioPrompt-box: an ontology-based clustering tool for searching in biological databases

Claudio Corsi, Paolo Ferragina, Roberto Marangoni

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 272 KB

english, 2007

24

Gene models from ESTs (GeneModelEST): an application on theSolanum lycopersicumgenome

Nunzio D'Agostino, Alessandra Traini, Luigi Frusciante, Maria Luisa Chiusano

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 252 KB

english, 2007